sofia_redux.scan: Scan Mode Algorithms for SOFIA Pipelines¶

The sofia_redux.scan package contains supporting algorithms and helper functions for reconstructing image maps from scanned observations.

Description¶

Architecture¶

Usage¶

Reference/API¶

sofia_redux.scan.channels¶

sofia_redux.scan.channels.channels Module¶

Classes¶

Channels([name, parent, info, size])

Creates a Channels instance.

Class Inheritance Diagram¶

digraph inheritancec0ff5e35a0 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Channels" [URL="../../api/sofia_redux.scan.channels.channels.Channels.html#sofia_redux.scan.channels.channels.Channels",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Channels" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.channels.channel_numba_functions Module¶

Functions¶

`flag_weights`(channel_gain, channel_weight, ...)	Flag channels according to degrees-of-freedom and weight.
`get_typical_gain_magnitude`(gains)	Return the typical gain magnitude for a gain array.
`get_one_over_f_stat`(weights, ...)	Return the total channel 1/f statistic.
`get_source_nefd`(filtered_source_gains, ...)	Return the source Noise-Equivalent-Flux-Density (NEFD).

sofia_redux.scan.channels.rotating.rotating Module¶

Classes¶

Rotating()

Class Inheritance Diagram¶

digraph inheritance4cc81b47f5 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Rotating" [URL="../../api/sofia_redux.scan.channels.rotating.rotating.Rotating.html#sofia_redux.scan.channels.rotating.rotating.Rotating",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Rotating" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.chopper¶

sofia_redux.scan.chopper.chopper Module¶

Classes¶

Chopper([x, y, time, threshold])

Initialize the chopper object.

Class Inheritance Diagram¶

digraph inheritancef41ff6fe5a { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Chopper" [URL="../../api/sofia_redux.scan.chopper.chopper.Chopper.html#sofia_redux.scan.chopper.chopper.Chopper",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Chopper" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.chopper.chopper_numba_functions Module¶

Functions¶

find_transitions(x, y, threshold)

Given (x, y) chopper positions, find the transitions and other parameters.

digraph inheritance09a03d5f17 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Conditions" [URL="../../api/sofia_redux.scan.configuration.conditions.Conditions.html#sofia_redux.scan.configuration.conditions.Conditions",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Options" -> "Conditions" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Options" [URL="../../api/sofia_redux.scan.configuration.options.Options.html#sofia_redux.scan.configuration.options.Options",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Options" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.configuration.dates Module¶

Classes¶

`DateRangeOptions`([allow_error, verbose])	Initialize the date range options.
`DateRange`(text)	Initialize a date range from a text string.

Initialize a coordinate system.

Class Inheritance Diagram¶

digraph inheritance828e48329e { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "CoordinateSystem" [URL="../../api/sofia_redux.scan.coordinate_systems.coordinate_system.CoordinateSystem.html#sofia_redux.scan.coordinate_systems.coordinate_system.CoordinateSystem",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "CoordinateSystem" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.coordinate_systems.coordinate_systems_numba_functions Module¶

Functions¶

`check_null`(coordinates)	Check if coordinates are zeroed.
`check_nan`(coordinates)	Check if coordinates are NaN.
`check_finite`(coordinates)	Check if coordinates are finite.
`check_infinite`(coordinates)	Check if coordinates are infinite.
`check_value`(value, coordinates)	Check if coordinates are equal to a given value in all dimensions.
`spherical_distance_to`(x, rx, cos_lat, ...)	Return the angular distance in radians between spherical coordinate sets.
`spherical_pole_transform`(x, px, cos_lat, ...)	Transform spherical coordinates to a new pole.

sofia_redux.scan.coordinate_systems.epoch.epoch Module¶

Classes¶

`Epoch`([equinox, immutable])	Initialize an astronomical epoch.
`JulianEpoch`([equinox, immutable])	Initialize a Julian epoch.
`BesselianEpoch`([equinox, immutable])	Initialize a Besselian epoch.

Class Inheritance Diagram¶

digraph inheritance1a0943c8e7 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "BesselianEpoch" [URL="../../api/sofia_redux.scan.coordinate_systems.epoch.epoch.BesselianEpoch.html#sofia_redux.scan.coordinate_systems.epoch.epoch.BesselianEpoch",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Epoch" -> "BesselianEpoch" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Epoch" [URL="../../api/sofia_redux.scan.coordinate_systems.epoch.epoch.Epoch.html#sofia_redux.scan.coordinate_systems.epoch.epoch.Epoch",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Epoch" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "JulianEpoch" [URL="../../api/sofia_redux.scan.coordinate_systems.epoch.epoch.JulianEpoch.html#sofia_redux.scan.coordinate_systems.epoch.epoch.JulianEpoch",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Epoch" -> "JulianEpoch" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.coordinate_systems.epoch.precession Module¶

Classes¶

Precession(from_epoch, to_epoch)

Initialize a precession object.

Class Inheritance Diagram¶

digraph inheritanceabb7a5859b { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Precession" [URL="../../api/sofia_redux.scan.coordinate_systems.epoch.precession.Precession.html#sofia_redux.scan.coordinate_systems.epoch.precession.Precession",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Precession" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.coordinate_systems.epoch.precession_numba_functions Module¶

Functions¶

`precess_single`(p, ra, dec, cos_lat, sin_lat)	Precess the coordinates with a precession matrix.
`precess_times`(p, ra, dec, cos_lat, sin_lat)	Precess the coordinates with a precession matrix.

sofia_redux.scan.coordinate_systems.projection.projection_numba_functions Module¶

Functions¶

`spherical_project_array`(x, y, cos_lat, ...)	Project multiple coordinates from a native pole onto a celestial pole.
`spherical_project`(x, y, cos_lat, sin_lat, ...)	Convert a single coordinate form a native pole to a celestial pole.
`spherical_deproject_array`(phi, theta, ...)	Project multiple coordinates from a celestial pole onto a native pole.
`spherical_deproject`(phi, theta, ...)	Deproject single coordinates about a celestial pole to a native pole.
`calculate_celestial_pole_array`(...)	Calculate the celestial pole when one or more of the inputs are arrays.
`calculate_celestial_pole`(native_reference_x, ...)	Calculate a celestial pole based on a reference and native reference.
`equal_angles`(a1, a2[, angular_accuracy])	Check if two angles are equal within accuracy.
`asin`(value)	Return the inverse sine of a value.
`asin_array`(values)	Return the inverse sine for an array of values.
`acos`(value)	Return the inverse cosine of an angle.
`acos_array`(values)	Return the inverse cosine for an array of values

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sofia_redux.scan.custom.example.flags.channel_flags Module¶

Classes¶

ExampleChannelFlags()

Class Inheritance Diagram¶

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Classes¶

HawcPlusChannelFlags()

Class Inheritance Diagram¶

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sofia_redux.scan.custom.hawc_plus.flags.frame_flags Module¶

Classes¶

HawcPlusFrameFlags()

Class Inheritance Diagram¶

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sofia_redux.scan.custom.hawc_plus.frames.frames Module¶

Classes¶

HawcPlusFrames()

Initialize HAWC+ frames.

Class Inheritance Diagram¶

digraph inheritancea637d0f5a0 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "FlaggedData" [URL="../../api/sofia_redux.scan.flags.flagged_data.FlaggedData.html#sofia_redux.scan.flags.flagged_data.FlaggedData",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "FlaggedData" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Frames" [URL="../../api/sofia_redux.scan.frames.frames.Frames.html#sofia_redux.scan.frames.frames.Frames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "FlaggedData" -> "Frames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "HawcPlusFrames" [URL="../../api/sofia_redux.scan.custom.hawc_plus.frames.frames.HawcPlusFrames.html#sofia_redux.scan.custom.hawc_plus.frames.frames.HawcPlusFrames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "SofiaFrames" -> "HawcPlusFrames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "HorizontalFrames" [URL="../../api/sofia_redux.scan.frames.horizontal_frames.HorizontalFrames.html#sofia_redux.scan.frames.horizontal_frames.HorizontalFrames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Frames" -> "HorizontalFrames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "SofiaFrames" [URL="../../api/sofia_redux.scan.custom.sofia.frames.frames.SofiaFrames.html#sofia_redux.scan.custom.sofia.frames.frames.SofiaFrames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "HorizontalFrames" -> "SofiaFrames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.custom.hawc_plus.frames.hawc_plus_frame_numba_functions Module¶

Functions¶

`validate`(valid, validated, status, ...)	Utility function to validate HAWC+ frames following a data read.
`dark_correct`(data, valid_frame, ...)	Perform the dark correction.
`downsample_hwp_angle`(hwp_angle, ...)	Return a downsampled HWP angle array.

sofia_redux.scan.custom.hawc_plus.integration.hawc_integration_numba_functions Module¶

Functions¶

`find_inconsistencies`(frame_valid, ...[, ...])	Find, fix (or flag) jumps and return the number corrected per channel.
`fix_jumps`(frame_valid, frame_data, ...[, ...])	Detect and fix jumps in the frame data for each channel.
`fix_block`(from_frame, to_frame, frame_valid, ...)	Jump correct a block of frames for a given channel.
`flag_block`(from_frame, to_frame, ...)	Flag all samples within a block for a given channel with a jump flag.
`level_block`(from_frame, to_frame, ...[, ...])	Level a frame block for a given channel.
`correct_jumps`(frame_data, frame_valid, ...)	Correct DAC jumps in the frame data.
`flag_zeroed_channels`(frame_data, ...)	Flag channels with the DISCARD flag if all frame data are zero valued.
`check_jumps`(start_counter, jump_counter, ...)	Checks for jumps in each channel.

Functions¶

Class Inheritance Diagram¶

digraph inheritance2563883973 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "InfoBase" [URL="../../api/sofia_redux.scan.info.base.InfoBase.html#sofia_redux.scan.info.base.InfoBase",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "InfoBase" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "SofiaExtendedScanningInfo" [URL="../../api/sofia_redux.scan.custom.sofia.info.extended_scanning.SofiaExtendedScanningInfo.html#sofia_redux.scan.custom.sofia.info.extended_scanning.SofiaExtendedScanningInfo",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "SofiaScanningInfo" -> "SofiaExtendedScanningInfo" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "SofiaScanningInfo" [URL="../../api/sofia_redux.scan.custom.sofia.info.scanning.SofiaScanningInfo.html#sofia_redux.scan.custom.sofia.info.scanning.SofiaScanningInfo",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "InfoBase" -> "SofiaScanningInfo" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.custom.sofia.info.gyro_drifts Module¶

Classes¶

`SofiaGyroDriftsInfo`()	Initialize the SOFIA gyro drift information.
`GyroDrift`(header, index)	Initializes a single drift.

Initialize an integration filter.

Class Inheritance Diagram¶

digraph inheritancef57ae10f93 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Filter" [URL="../../api/sofia_redux.scan.filters.filter.Filter.html#sofia_redux.scan.filters.filter.Filter",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Filter" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.filters.filters_numba_functions Module¶

Functions¶

`load_timestream`(frame_data, frame_weights, ...)	Load timestream data from the supplied frame data.
`remove_rejection_from_frames`(frame_data, ...)	Remove the rejected signal from frame data.
`apply_rejection_to_parms`(frame_valid, ...)	Update the frame dependents following the remove operation.
`dft_filter_channels`(frame_data, rejection, ...)	Filter frame data using the filter rejection DFT method.
`dft_filter_frames`(data, rejection, n_frames)	Use DFT to filter single channel data.
`dft_filter_frequency_channel`(data, fch, ...)	Apply DFT filtering for a given frequency channel.
`level_for_channels`(signal, valid_frame, ...)	Level a given signal over all frames for the given channel indices.
`level`(data, n_frames)	Remove the average level from each channel for the provided data set.
`level_1d`(data, n_frames)	Remove the average from a given 1-D data array.
`resample`(old, new)	Fast implementation of the `resample` method.
`accumulate_profiles`(profiles, ...)	Accumulate the calculated profiles onto channel profiles.
`calculate_varied_point_response`(min_fch, ...)	Calculate the point response for the varied filter.
`calculate_channel_point_responses`(min_fch, ...)	Calculate the point response for each given channel of an adaptive filter.
`calc_mean_amplitudes`(amplitudes, ...)	Calculate the mean amplitudes and weights of a Fourier spectrum.
`whiten_profile`(amplitudes, ...)	Fast implementation of the `whiten_profile` method.
`add_frame_parms`(rejected, points, weights, ...)	Add to the frame dependents based on the rejected signal.
`expand_rejection_filter`(reject, half_width, df)	Expand the rejection filter by a given width.
`harmonize_rejection_filter`(reject, ...)	Add harmonics to the rejection filter.

sofia_redux.scan.flags¶

sofia_redux.scan.flags.flags Module¶

Classes¶

Flags()

The Flags class contains methods to manipulate flagging.

Class Inheritance Diagram¶

digraph inheritance490b7fee3d { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Flags" [URL="../../api/sofia_redux.scan.flags.flags.Flags.html#sofia_redux.scan.flags.flags.Flags",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="The Flags class contains methods to manipulate flagging."]; "ABC" -> "Flags" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.flags.flag_numba_functions Module¶

Functions¶

`set_flags`(flag_array, flag[, indices])	Add a flag indicator to an array of flags.
`unflag`(flag_array[, flag, indices])	Remove a flag indicator from an array of flags.
`flatten_nd_indices`(indices, array_shape)	Converts ND array indices to flat indices.
`is_flagged`(flag_array[, flag, exact])	Return whether a flag array is flagged with a given flag.
`is_unflagged`(flag_array[, flag, exact])	Return whether a flag array is unflagged by the given flag.
`get_mem_correction`(data, noise[, ...])	Determine the Maximum-Entropy-Method (MEM) correction.
`set_new_blank_value`(data, old_blank, new_blank)	Set all old blanking levels in the data to the new blanking level.

sofia_redux.scan.flags.array_flags Module¶

Classes¶

ArrayFlags()

Class Inheritance Diagram¶

digraph inheritancec841c9afb5 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "ArrayFlags" [URL="../../api/sofia_redux.scan.flags.array_flags.ArrayFlags.html#sofia_redux.scan.flags.array_flags.ArrayFlags",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Flags" -> "ArrayFlags" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Flags" [URL="../../api/sofia_redux.scan.flags.flags.Flags.html#sofia_redux.scan.flags.flags.Flags",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="The Flags class contains methods to manipulate flagging."]; "ABC" -> "Flags" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.flags.motion_flags Module¶

Classes¶

MotionFlags(direction)

Initialize a MotionFlags object.

Class Inheritance Diagram¶

digraph inheritancef883bd410d { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Flags" [URL="../../api/sofia_redux.scan.flags.flags.Flags.html#sofia_redux.scan.flags.flags.Flags",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="The Flags class contains methods to manipulate flagging."]; "ABC" -> "Flags" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "MotionFlags" [URL="../../api/sofia_redux.scan.flags.motion_flags.MotionFlags.html#sofia_redux.scan.flags.motion_flags.MotionFlags",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Flags" -> "MotionFlags" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.flags.mounts Module¶

Classes¶

Mount(value[, names, module, qualname, ...])

The Mount class contains all available types of telescope mount.

Class Inheritance Diagram¶

digraph inheritance2ff98ef52a { bgcolor=transparent; rankdir=LR; size=""; "Enum" [URL="https://docs.python.org/3/library/enum.html#enum.Enum",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Create a collection of name/value pairs."]; "Mount" [URL="../../api/sofia_redux.scan.flags.mounts.Mount.html#sofia_redux.scan.flags.mounts.Mount",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="The Mount class contains all available types of telescope mount."]; "Enum" -> "Mount" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.frames¶

sofia_redux.scan.frames.frames Module¶

Classes¶

Frames()

The Frames class contains all time-dependent data in an integration.

Class Inheritance Diagram¶

digraph inheritance981e366461 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "FlaggedData" [URL="../../api/sofia_redux.scan.flags.flagged_data.FlaggedData.html#sofia_redux.scan.flags.flagged_data.FlaggedData",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "FlaggedData" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Frames" [URL="../../api/sofia_redux.scan.frames.frames.Frames.html#sofia_redux.scan.frames.frames.Frames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "FlaggedData" -> "Frames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.frames.frames_numba_functions Module¶

Functions¶

`add_dependents`(dependents, dp, frame_valid)	Add increments to the frame dependents.
`validate_frames`(valid, cos_a, sin_a, ...)	Checks validity of frame data and updates the angles based on mount type.
`downsample_data`(data, sample_flag, valid, ...)	Downsample data to a new resolution using a window kernel.

sofia_redux.scan.frames.horizontal_frames Module¶

Classes¶

HorizontalFrames()

Initialize horizontal frames.

Class Inheritance Diagram¶

digraph inheritancea56eea71fc { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "FlaggedData" [URL="../../api/sofia_redux.scan.flags.flagged_data.FlaggedData.html#sofia_redux.scan.flags.flagged_data.FlaggedData",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "FlaggedData" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "Frames" [URL="../../api/sofia_redux.scan.frames.frames.Frames.html#sofia_redux.scan.frames.frames.Frames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "FlaggedData" -> "Frames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "HorizontalFrames" [URL="../../api/sofia_redux.scan.frames.horizontal_frames.HorizontalFrames.html#sofia_redux.scan.frames.horizontal_frames.HorizontalFrames",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "Frames" -> "HorizontalFrames" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

digraph inheritance20f16371b1 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Info" [URL="../../api/sofia_redux.scan.info.info.Info.html#sofia_redux.scan.info.info.Info",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Info" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; "WeatherInfo" [URL="../../api/sofia_redux.scan.info.weather_info.WeatherInfo.html#sofia_redux.scan.info.weather_info.WeatherInfo",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="An abstract class used to retrieve information on environmental conditions"]; "Info" -> "WeatherInfo" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.integration¶

sofia_redux.scan.integration.integration Module¶

Classes¶

Integration([scan])

Initialize a scan integration.

Class Inheritance Diagram¶

digraph inheritance29bc5820c2 { bgcolor=transparent; rankdir=LR; size=""; "ABC" [URL="https://docs.python.org/3/library/abc.html#abc.ABC",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top",tooltip="Helper class that provides a standard way to create an ABC using"]; "Integration" [URL="../../api/sofia_redux.scan.integration.integration.Integration.html#sofia_redux.scan.integration.integration.Integration",fillcolor=white,fontname="Vera Sans, DejaVu Sans, Liberation Sans, Arial, Helvetica, sans",fontsize=10,height=0.25,margin=0.25,shape=box,style="setlinewidth(0.5),filled",target="_top"]; "ABC" -> "Integration" [arrowsize=1.2,arrowtail=empty,dir=back,style="setlinewidth(0.5)"]; }

sofia_redux.scan.integration.integration_numba_functions Module¶

Functions¶

`determine_time_weights`(block_size, ...)	Determine the frame weights (noise) in time.
`get_time_weights_by_block`(frame_data, ...[, ...])	Determine the frame weighting (time) for all integration frames.
`robust_channel_weights`(frame_data, ...)	Derive robust channel variance and weights.
`differential_channel_weights`(frame_data, ...)	Derive channel weights using the differential method.
`rms_channel_weights`(frame_data, ...)	Derive channel weights from the RMS of the frame data values.
`set_weights_from_var_stats`(channel_indices, ...)	Set a number of channel data parameters from variance statistics.
`despike_neighbouring`(frame_data, ...)	A Numba function to despike frame samples using neighbour method.
`despike_absolute`(frame_data, sample_flags, ...)	A Numba function to despike frame samples using absolute method.
`despike_gradual`(frame_data, sample_flags, ...)	A Numba function to despike frame samples using gradual method.
`despike_multi_resolution`(timestream_data, ...)	A Numba function to despike frame samples using multi-resolution method.
`flagged_channels_per_frame`(sample_flags, ...)	Return the total number of flagged channels per frame.
`flagged_frames_per_channel`(sample_flags, ...)	Return the total number of flagged frames per channel.
`frame_block_expand_flag`(sample_flags, ...)	If a single frame is flagged in a block, flag all frames in the block.
`next_weight_transit`(frame_weights, level, ...)	Returns the next frame weight transit above or below a given level.
`get_mean_frame_level`(frame_data, ...[, ...])	Return the mean frame values for each channel.
`weighted_mean_frame_level`(frame_data, ...[, ...])	Return the mean frame data values for each channel.
`weighted_median_frame_level`(frame_data, ...)	Return the median frame data values for each channel.
`remove_channel_drifts`(frame_data, ...[, robust])	Calculate and remove the average offset from each channel.
`level`(frame_data, frame_weights, ...)	Subtract an offset per channel from the frame data between given frames.
`apply_drifts_to_channel_data`(...)	Apply the average drifts to channel data.
`detector_stage`(frame_data, frame_valid, ...)	Stage the detector by applying channel hardware gains to the frame data.
`readout_stage`(frame_data, frame_valid, ...)	Unstage the detector by removing channel hardware gains to the frame data.
`search_corners`(sample_coordinates, ...)	Return the x, y range of sample coordinates.
`get_weighted_timestream`(sample_data, ...)	Given sample data and flags, return weighted values, and full weights.
`calculate_2d_velocities`(coordinates, dt)	Calculate the velocities for (x, y) coordinates.
`calculate_2d_accelerations`(coordinates, dt)	Calculate the accelerations for (x, y) coordinates.
`classify_scanning_speeds`(speeds, min_speed, ...)	Classify scanning speeds.
`smooth_positions`(coordinates, bin_size[, ...])	Smooth (x, y) coordinates with a box kernel of given size.
`get_covariance`(frame_data, frame_valid, ...)	Return the channel covariance.
`get_full_covariance_matrix`(covariance, ...)	Return the full covariance in terms of fixed channel indices.
`get_partial_covariance_matrix`(covariance, ...)	Return the covariance matrix for certain channel indices.
`downsample_frame_data`(data, window[, valid])	Downsample data using a supplied kernel.
`downsample_frame_flags`(flags, window[, valid])	Downsample frame flags using a supplied kernel.
`get_downsample_start_indices`(frame_valid, ...)	Down-sample frame data using a given window kernel.
`get_valid_downsampling_frames`(valid_frames, ...)	Return the valid downsampled frames that may be calculated.

`get_signal_variance`(values[, weights])	Return the signal variance.
`get_ml_correlated`(frame_data, frame_weights, ...)	Derive the maximum-likelihood gain increments and weights.
`get_robust_correlated`(frame_data, ...[, ...])	Derive the robust gain increment and weights.
`resync_gains`(frame_data, signal_values, ...)	Resync the frame data with the signal and gain increments.
`apply_gain_increments`(frame_data, ...)	Apply the gain increments to frame data and signals.
`calculate_filtering`(channel_indices, ...)	Calculate the new signal and channel source filtering.
`differentiate_signal`(values[, dt])	Differentiate the signal values in-place.
`differentiate_weighted_signal`(values, weights)	Differentiate signal values and weights in-place.
`integrate_signal`(values[, dt])	Integrate signal values in-place using the trapezoid rule.
`integrate_weighted_signal`(values, weights[, dt])	Integrate signal values and weights in-place using the trapezoid rule.
`add_drifts`(signal_values, drifts, drift_length)	Add drift values to the signal.
`level`(values, start_frame, end_frame, resolution)	Remove and return the average value between a start and end frame.
`remove_drifts`(signal_values, drifts, ...[, ...])	Remove drifts (average signal levels in a frame block) from the signal.
`get_covariance`(signal_values, frame_data, ...)	Return the signal covariance for samples in frames/channel.
`get_ml_gain_increment`(frame_data, signal_wc, ...)	Return the maximum-likelihood gain increment.
`get_robust_gain_increment`(frame_data, ...)	Return the robust median gain increment.
`synchronize_gains`(frame_data, sample_flags, ...)	Resync the frame data with the gain deltas and update dependents.
`prepare_frame_temp_fields`(signal_values, ...)	Populate some temporary parameters for signal numerical operations.

sofia_redux.scan.signal.correlated_signal Module¶

Classes¶

CorrelatedSignal(integration, mode)

Initialize a correlated signal.

Class Inheritance Diagram¶

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sofia_redux.scan.simulation¶

sofia_redux.scan.simulation.info Module¶

Classes¶

SimulationInfo([configuration_path])

Initialize the example instrument simulation information object.

Class Inheritance Diagram¶

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sofia_redux.scan.simulation.scan_patterns.constant_speed Module¶

Functions¶

to_constant_speed(pattern)

Convert a pattern such that the samples are equally spaced wrt speed.

sofia_redux.scan.simulation.scan_patterns.daisy Module¶

Functions¶

`daisy_pattern_offset`(radius, radial_period, ...)	Create a daisy scan pattern in offset coordinates.
`daisy_pattern_equatorial`(center, t_interval, ...)	Create a daisy scan pattern in equatorial coordinates.

sofia_redux.scan.simulation.scan_patterns.lissajous Module¶

Functions¶

`lissajous_offset`(width, height, t_interval)	Create a Lissajous scan pattern in offset coordinates.
`lissajous_pattern_equatorial`(center, ...)	Create a Lissajous scan pattern in equatorial coordinates.

sofia_redux.scan.simulation.scan_patterns.skydip Module¶

Functions¶

Class Inheritance Diagram¶

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sofia_redux.scan.source_models¶

sofia_redux.scan.source_models.source_model Module¶

Classes¶

SourceModel(info[, reduction])

Initialize a source model.

Class Inheritance Diagram¶

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sofia_redux.scan.source_models.source_numba_functions Module¶

Functions¶

`calculate_coupling_increment`(map_indices, ...)	Calculate and return the coupling increment factor.
`get_sample_points`(frame_data, frame_gains, ...)	Return the cross-product of frame and channel gains.
`blank_sample_values`(frame, channel_index, ...)	Set bad frame/channel indices to blank values.
`flag_out_of_range_coupling`(channel_indices, ...)	Flags channels with an out-of-range coupling value as "BLIND"
`sync_map_samples`(frame_data, frame_valid, ...)	Remove map source gains from frame data and flag samples.
`get_delta_sync_parms`(channel_source_gains, ...)	Calculate frame/channel dependent deltas following source synchronization.
`flag_outside`(sample_coordinates, ...)	Flag samples outside of the allowed mapping range.
`validate_pixel_indices`(indices, x_size, y_size)	Set pixel indices outside of the map range to (0, 0).
`add_skydip_frames`(data, weight, ...)	Add signal values to the sky dip model data.
`get_source_signal`(frame_data, frame_valid, ...)	Remove map source gains from frame data and flag samples.

sofia_redux.scan.utilities¶

sofia_redux.scan.utilities.utils Module¶

Functions¶

`get_string`(value[, default])	Return a string representation of the given value.
`get_bool`(value[, default])	Return a bool representation of the given value.
`get_int`(value[, default])	Return an integer representation of the given value.
`get_float`(value[, default])	Return a float representation of the given value.
`get_range`(value[, default, is_positive])	Return a Range object generated from the given value.
`get_list`(value)	Resolve the given value into a list.
`get_string_list`(value[, delimiter, default])	Return a list of strings from the given single string.
`get_float_list`(value[, delimiter, default])	Return a list of floats from a single string.
`get_int_list`(value[, delimiter, default, ...])	Return a list of ints from a single string.
`to_int_list`(values[, is_positive])	Convert all elements in a list to integers.
`parse_time`(hms_string[, angle])	Returns H:M:S string as time Quantity.
`parse_angle`(dms)	Convert a degree:minute:second string into an angle.
`get_dms_angle`(value[, default])	Return a degree angle quantity from a given value.
`get_hms_time`(value[, angle, default])	Return a time or hour angle quantity from a given value.
`get_sign`(value[, default])	Return an integer representation of a sign.
`get_epoch`(equinox)	Return an astropy frame representing the equinox of an observation.
`valid_value`(value)	Return if a given value is valid in the context of unknown values.
`robust_mean`(array[, tails])	Performs a mean calculation with optional tails.
`robust_sigma_clip_mask`(values[, weights, ...])	Return a masking array indicating sigma clipped elements of an input array.
`roundup_ratio`(a, b)	Returns int((a + b - 1) / b).
`rotate`(positions, angle)	Rotate 2 dimensional coordinates by a given angle.
`log2round`(x)	Returns the rounded value of log_2(x).
`pow2round`(x)	Returns the value rounded to the closest 2^N integer.
`pow2floor`(x)	Returns the value floored to the closest 2^N integer.
`pow2ceil`(x)	Returns the value ceiled to the closest 2^N integer.
`skycoord_insert_blanks`(coordinates, ...)	Insert zeroed coordinates in an astropy coordinate frame.
`dict_intersection`(options1, options2[, ...])	Return the intersection of two dictionaries.
`dict_difference`(options1, options2[, ...])	Return the difference of two dictionaries.
`to_header_quantity`(value[, unit, keep])	Convert a value to a Quantity suitable for header entry.
`to_header_float`(value[, unit])	Parse a value to a parsable header float value.
`combine_beams`(beam1, beam2[, deconvolve])	Convolve or deconvolve one beam by another.
`convolve_beam`(beam1, beam2)	Convolve one beam by another.
`deconvolve_beam`(beam1, beam2)	Deconvolve one beam by another.
`encompass_beam`(beam1, beam2)	Encompass one beam by another.
`encompass_beam_fwhm`(beam, fwhm)	Encompass one beam by a given fwhm.
`get_beam_area`(psf)	Return the area of a 2-dimensional Gaussian model.
`get_header_quantity`(header, key[, default, ...])	Get an astropy quantity from a FITS header value.
`ascii_file_to_frame_data`(ascii_file)	Convert time stream data from a ascii file to a numpy array.
`insert_into_header`(header, key, value[, ...])	Insert a key, value into the header at a specific location.
`insert_info_in_header`(header, header_info[, ...])	Insert header information into a header at a given location.
`to_header_cards`(header_info)	Convert header-like information to a list of cards.
`clear_numba_cache`()	Aggressively remove the numba cache for the sofia_scan package.
`round_values`(x)	Round any given value to the expected result.
`get_comment_unit`(comment[, default])	See if a header comment contains a unit and return if found.
`safe_sidereal_time`(t, kind[, longitude, model])	Calculate sidereal time, even if offline.

sofia_redux.scan.utilities.numba_functions Module¶

Functions¶

`smart_median_1d`(values[, weights, ...])	Returns the weighted median of values in one dimension.
`smart_median_2d`(values[, weights, ...])	Returns the weighted median of values in two dimensions.
`smart_median`(values[, weights, axis, ...])	Returns the weighted median of values in K-dimensions.
`roundup_ratio`(a, b)	Returns int((a + b - 1) / b).
`level`(values[, start, end, resolution])	Subtract the average value from all values and return the average.
`smooth_1d`(values, kernel)	Apply 1-D kernel convolution in place.
`gaussian_kernel`(n, sigma)	Create a Gaussian convolution kernel.
`mean`(values[, weights, start, end])	Return the (optionally weighted) mean value of an array.
`box_smooth_along_zero_axis`(values, bin_size)	Smooth a 2-D array of values along the zeroth axis.
`log2round`(x)	Return the rounded value of log_2(x).
`log2ceil`(x)	Return the ceiled value of log_2(x).
`pow2round`(x)	Return 2 to the power of round(log_2(x)).
`pow2floor`(x)	Return 2 to the power of floor(log_2(x)).
`pow2ceil`(x)	Return 2 to the power of ceil(log_2(x)).
`regular_kernel_convolve`(data, kernel[, ...])	Direct convolution of ND data with a given kernel.
`regular_coarse_kernel_convolve`(data, kernel, ...)	Direct convolution of ND data with a given kernel onto a coarse grid.
`smooth_values_at`(data, kernel, indices, ...)	Return the values of data, smoothed by a kernel at the given indices.
`smooth_value_at`(data, kernel, index, ...)	Return the convolution of data with a kernel at a single point.
`point_aligned_smooth`(flat_data, flat_kernel, ...)	Perform direct kernel convolution at a single point.
`point_smooth`(flat_data, index, ...)	Convolution with a spline representation of a kernel at a single point.
`sequential_array_add`(array, add_values, ...)	Add one array of values to another.
`index_of_max`(array[, valid, sign])	Return the maximum value and index of that value.
`robust_mean`(values[, tails])	Calculate the robust mean value excluding tails.

sofia_redux.scan.utilities.bracketed_values Module¶

Classes¶

BracketedValues([start, end, unit])

Initialize a BracketedValues object.

Class Inheritance Diagram¶

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sofia_redux.scan.utilities.class_provider Module¶

Functions¶

`fix_instrument_name`(name)	Return a valid name for the given instrument.
`get_instrument_module_path`(instrument)	Return the module path to custom SOFSCAN instrument
`to_class_name`(name)	Return the associated class type name for a given string.
`to_module_name`(class_name)	Convert a class name to the base module it may be found in.
`get_instrument_path_and_class_name`(instrument)	Get the module path and class name prefix for a given instrument name.
`get_class_for`(instrument, module_path_name)	Return an instrument specific class for a given module.
`channel_class_for`(instrument)	Returns a Channels instance for a given instrument.
`channel_data_class_for`(instrument)	Returns a ChannelData instance for a given instrument.
`channel_group_class_for`(instrument)	Returns the appropriate ChannelGroup class for a given instrument.
`frames_class_for`(instrument)	Returns the appropriate ChannelGroup class for a given instrument.
`frames_instance_for`(instrument)	Return a Frames instance for a given instrument.
`info_class_for`(instrument)	Return an Info instance given an instrument name.
`get_integration_class`(instrument)	Return an Integration instance given an instrument name.
`get_scan_class`(instrument)	Return the appropriate scan class for an instrument name.
`default_modality_mode`(modality)	Return a default mode class based on modality class.
`get_grid_class`(name)	Returns a Grid class of the given name
`get_projection_class`(name)	Returns a Projection class of the given name
`get_simulated_source_class`(name)	Return a simulated source of the given name.

sofia_redux.scan.utilities.range Module¶

Classes¶

Range([min_val, max_val, include_min, ...])

Initialize a Range object.

Class Inheritance Diagram¶

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Navigation

sofia_redux.scan: Scan Mode Algorithms for SOFIA Pipelines¶

Description¶

Architecture¶

Usage¶

Reference/API¶

sofia_redux.scan.channels¶

sofia_redux.scan.channels.channels Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.channel_numba_functions Module¶

Functions¶

sofia_redux.scan.channels.camera.camera Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.camera.color_arrangement Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.camera.single_color_arrangement Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.channel_data.channel_data Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.channel_data.color_arrangement_data Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.channel_data.single_color_channel_data Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.channel_group.channel_group Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.division.division Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.gain_provider.gain_provider Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.gain_provider.field_gain_provider Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.gain_provider.sky_gradient Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.gain_provider.zero_mean_gains Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.modality.modality Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.modality.correlated_modality Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.modality.coupled_modality Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.modality.non_linear_modality Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.mode Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.response Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.acceleration_response Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.chopper_response Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.correlated_mode Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.field_response Module¶

Classes¶

Class Inheritance Diagram¶

sofia_redux.scan.channels.mode.motion_response Module¶

Classes¶